The Yu Lab develops open-source tools and statistical methodoligies for bulk and single-cell omics analysis.Codes can be found at Github.

• scATAC-pro: A comprehensive pipeline for single-cell ATAC-seq data analysisd

• GMAP: Identify topologically associated domains and subdomains in Hi-C data

• LiMACC: Identify chromatin interations from promoter Capture Hi-C data

• UM-MDR: A unified model based multifactor dimensionality reduction framework for detecting gene-gene interactions

• Multi-QMDR: Multivariate quantitative multifactor dimensionality reduction for detecting gene-gene interactions

• AucPR:an AUC-based approach using penalized regression for disease prediction with high-dimensional omics data